Main Publication List
​2017-Present

#: co-first author; *: co-corresponding author
  1. Wei X#, Chen M#, Zhang Q#, Gong J#, Liu J#, Yong K#, Wang Q, Fan J, Chen S, Hua H, Luo Z, Zhao X, Wang X, Li W, Cong J, Yu X, Wang Z, Huang R, Chen J, Zhou X, Qiu J, Xu P, Murray J, Wang H, Xu Y, Xu C, Xu G, Yang J, Han B, Huang X*. Genomic investigation of 18,421 lines reveals the genetic architecture of rice. Science 385, eadm8762. doi.org/10.1126/science.adm8762 (2024). [*BioArt论文解读*] [*PBJ详解*] [*上师大官方报道*]
  2. Cong J#, Zhang C#, Zhang Q, Yu X, Huang J, Ni X, Wei X, Huang X, Qiu J*, Zhou X*. Conserved features and diversity attributes of chimeric RNAs across accessions in four plants. Plant Biotech. J.. 22, 3151-3163. doi.org/10.1111/pbi.14437 (2024). [*BioArt论文解读*][*SpotLight by Trends*]
  3. Chen S#*, Gao S, Wang D, Liu J, Ren Y, Wang Z, Wei X, Wang Q, Huang X. FKF1b controls reproductive transition associated with adaptation to geographical distribution in maize. J. INTEGR. PLANT BIOL. 66:943-955. doi.org/10.1111/jipb.13639 (2024).
  4. Chen J#, Tan C#, Zhu M#, Zhang C#, Wang Z, Ni X, Liu Y, Tong W, Liu H, Wei X, Fang X, Xu Y, Huang X, Qiu J*, Liu H*. CropGS-Hub: a comprehensive database of genotype and phenotype resources for genomic prediction in major crops. Nucl. Acids Res.. doi.org/10.1093/nar/gkad1062 (2023). [*BioArt论文解读*]
  5. Shi J*, Tian Z, Lai J, Huang X*. Plant pan-genomics and its applications. Mol Plant16, 168-186. (2023).
  6. Wang Q, Fan J, Cong J, Chen M, Qiu J, Liu J, Zhao X, Huang R, Liu H, Huang X*. Natural variation of ZmLNG1 alters organ shapes in maize. New Phytol.. 237, 471-482. doi.org/10.1111/nph.18563 (2023). [*BioArt论文解读*]
  7. Zhang Q, Zhang S, Yu X, Wei X, Huang X, Zhou X*. Fine-tuning grain amylose contents by genome editing of Waxy cis-regulatory region in rice. Mol Breed.42, 72. doi: 10.1007/s11032-022-01342-4 (2022).
  8. Huang X*, Huang S*, Han B, Li J*. The integrated genomics of crop domestication and breeding. Cell185, 2828-2839. doi: 10.1016/j.cell.2022.04.036 (2022). [*BioArt论文解读*]
  9. Fan J, Hua H, Luo Z, Zhang Q, Chen M, Gong J, Wei X,Huang Z, Huang X, Wang Q*. Whole‑Genome Sequencing of 117 Chromosome Segment Substitution Lines for Genetic Analyses of Complex Traits in Rice. Rice 15, 5. doi: 10.1186/s12284-022-00550-y (2022). [PDF]
  10. Chen R#, Deng Y#, Ding Y#, Guo J#, Qiu J#, Wang B, Wang C, Xie Y,Zhang Z, Chen J, Chen L, Chu C, He G, He Z, Huang X, Xing Y, Yang S, Xie D*, Liu Y*, Li J*. Rice functional genomics: decades’ efforts and roads ahead. Sci. China Life Sci 65, 33–92. doi: 10.1007/s11427-021-2024-0 (2022). [PDF]
  11. Zhang S, Huang X*, Han B*. Understanding the genetic basis of rice heterosis: Advances and prospects. Crop J.  9, 688-692. doi.org/10.1016/j.cj.2021.03.011 (2021). [link]
  12. Wei X#, Qiu J#, Yong K, Fan J, Zhang Q, Hua H, Liu J, Wang Q, Olsen K, Han B, Huang X*. A quantitative genomics map of rice provides genetic insights and guides breeding. Nat. Genet. 53, 243–253. doi.org/10.1038/s41588-020-00769-9 (2021). [link] [Highly Cited Paper] [*BioArt论文解读*]
  13. Chen M#, Fan W#, Ji F#, Hua H, Liu J, Yan M, Ma Q, Fan J, Wan Q, Zhang S, Liu G, Sun Z, Tian C, Zhao F, Zheng J, Zhang Q, Chen J, Qiu J, Wei X, Chen Z, Zhang P*，Pei D*, Yang J*, Huang X*. Genome-wide Identification of Agronomically Important Genes in Outcrossing Crops using OutcrossSeq. Mol. Plant. 14, 556–570. doi: 10.1016/j.molp.2021.01.003 (2021). [link] [*BioArt论文解读*] 
  14. Liu J#, Gong J, Wei X, Yang S, Huang X, Li C, Zhou X*. Dominance complementation of Hd1 and Ghd8 contributes to extremely late flowering in two rice hybrids. Mol. Breeding. 40. doi: 10.1007/s11032-020-01162-4 (2020). [PDF]
  15. Lv Q#, Qiu J#, Liu J#, Li Z, Zhang W, Wang Q, Fang J, Pan J, Chen Z, Cheng W, Barker M, Huang X, Wei X*, Cheng K*. The Chimonanthus salicifolius genome provides insight into magnoliids evolution and flavonoids biosynthesis. The Plant J. 103, 1910–1923. doi: 10.1111/TPJ.14874 (2020).
  16. Chen S, Huang X*. DNA sequencing: the key to unveiling genome Sci. China Life Sci. 63, 1593–1596. doi: 10.1007/s11427-020-1709-6 (2020). [PDF]
  17. Zhang W#, Liu J#, Zhang Y, Qiu J, Li Y, Zheng Y, Zheng B, Hu F*, Dai S*, Huang X*. A high-quality genome sequence of alkaligrass provides insights into halophyte stress tolerance. Sci. China Life Sci. 63. doi: 10.1007/s11427-020-1662-x (2020). [PDF]
  18. Wang Q#, Tang J, Han B & Huang X*. Advances in genome-wide association studies of complex traits in rice. Theor Appl Genet. 133, 1415–1425. doi:10.1007/s00122-019-03473-3 (2019). [PDF]
  19. Liu H#, Wang Q#, Chen M, Ding Y, Yang X, Liu J, Li X, Zhou C, Tian Q, Lu Y, Fan D, Shi J, Zhang L, Kang C, Sun M, Li F, Wu Y, Zhang Y, Liu B, Zhao XY, Feng Q, Yang J, Han B, Lai J, Zhang X-S*, Huang X*. Genome-wide identification and analysis of heterotic loci in three maize hybrids. Plant Biotech J. 18, 185–194. doi: 10.1111/pbi.13186 (2019). [PDF] [*论文解读*]
  20. Wang C#, Tang S#, Zhan Q, Hou Q, Zhao Y, Zhao Q, Feng Q, Zhou C, Lyu D, Cui L, Li Y, Miao J, Zhu C, Lu Y, Wang Y, Wang Z, Zhu J, Shangguan Y, Gong J, Yang S, Wang W, Zhang J, Xie H, Huang X*, Han B*. Dissecting a heterotic gene through GradedPool-Seq mapping informs a new rice-improvement strategy. Nat. Commun. 10:2982 (2019). [PDF].
  21. Wang A#, Hou Q#, Si L, Huang X, Luo J, Lu D, Zhu J, Shangguan Y, Miao J, Xie Y, Wang Y, Zhao Q, Feng Q, Zhou C, Li Y, Fan D, Lu Y, Tian Q, Wang Z, Han B*. The PLATZ transcription factor GL6 affects grain length and number in rice. Plant Physiol. 180, 2077–2090. doi: 10.1104/pp.18.01574 (2019). [PDF].
  22. Chen K, Guo T, Li X-M, Zhang Y-M, Yang Y-B, Ye W-W, Dong N-Q, Shi C-L, Kan Y, Xiang Y-H, Zhang H, Li Y-C, Gao J-P, Huang X, Zhao Q, Han B, Shan J-X, Lin H-X*. Translational Regulation of Plant Response to High Temperature by a Dual Function tRNAHis Guanylyltransferase in Rice. Mol. Plant 12, 1123–1142. doi.org/10.1016/j.molp.2019.04.012 (2019). [PDF]
  23. Chen E, Huang X*, Tian Z, Wing R.A*, Han B*. The Genomics of Oryza Species Provides Insights into Rice Domestication and Heterosis. Annu. Rev. Plant Biol. 70:639-665 (2019). [PDF].
  24. Liu J, Li M, Zhang Q, Wei X, Huang X*. Exploring the molecular basis of heterosis for plant breeding. J Integr Plant Biol. 62:287-298. doi.org/10.1111/jipb.12804 (2019). [PDF] [*BioArt论文解读*]
  25. Zhou X, Huang X*. Genome-wide Association Studies in Rice: How to Solve the Low Power Problems? Mol. Plant 12:10-12 (2019) [PDF]
  26. Yang J*, Huang X*. A new high-quality genome sequence in soybean. Sci. China Life Sci. 61:1604-1605 (2018) [PDF].
  27. Wei Xin*, Huang X*. Identification of a seed dormancy gene in soybean sheds light on crop domestication. Sci. China Life Sci. 61:1439-1441 (2018). [PDF]
  28. Zhao Q#, Feng Q#, Lu H, Li Y, Wang A, Tian Q, Zhan Q, Lu Y, Zhang L, Huang T, Wang Y, Fan D, Zhao Y, Wang Z, Zhou C, Chen J, Zhu C, Li W, Weng Q, Xu Q, Wang ZX, Wei X, Han B, Huang X*. Pan-genome analysis highlights the extent of genomic variation in cultivated and wild rice. Nat Genet. 50: 278-284 (2018). [PDF] [Highly Cited Paper] [*BioArt论文解读*]
  29. Gong J#, Miao J#, Zhao Y, Zhao Q, Feng Q, Zhan Q, Cheng B, Xia J, Huang X*, Yang S* and Han B*. Dissecting genetic basis of grain shape and chalkiness traits in hybrid rice using multiple collaborative populations. Mol. Plant 10: 1353-1356 (2017). [PDF].
  30. Fang L#, Gong H#, Hu Y#, Liu C#, Zhou B, Huang T, Wang Y, Chen S, Fang DD, Du X, Chen H, Chen J, Wang S, Wang Q, Wan Q, Liu B, Pan M, Chang L, Wu H, Mei G, Xiang D, Li X, Cai C, Zhu X, Chen ZJ, Han B, Chen X, Guo W, Zhang T*, Huang X*. Genomic insights into divergence and dual domestication of cultivated allotetraploid cottons. Genome Biol. 18:33 (2017). [PDF]
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